Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Neural

Cell type

Brain

MeSH Description

The part of CENTRAL NERVOUS SYSTEM that is contained within the skull (CRANIUM). Arising from the NEURAL TUBE, the embryonic brain is comprised of three major parts including PROSENCEPHALON (the forebrain); MESENCEPHALON (the midbrain); and RHOMBENCEPHALON (the hindbrain). The developed brain consists of CEREBRUM; CEREBELLUM; and other structures in the BRAIN STEM.

Sample

sample type

organoid

tissue

brain

sex

female

health state

healthy

dev stage

embryonic

age

5 day

donor ID

ENCDO222AAA

lab

Bradley Bernstein, Broad

source

Paola Arlotta

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

26540538

Reads aligned (%)

98.9

Duplicates removed (%)

14.7

Number of peaks

46032 (qval < 1E-05)

hg19

Number of total reads

26540538

Reads aligned (%)

98.6

Duplicates removed (%)

15.2

Number of peaks

45943 (qval < 1E-05)