Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Epidermis

Cell type

HFFc6

NA

NA

Sample

sample type

cell line

cell line

HFFc6

sex

male

health state

normal

dev stage

newborn

age

0 year

donor ID

ENCDO737WWC

lab

Job Dekker, UMass

source

Job Dekker

passage number

27

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

28509554

Reads aligned (%)

98.9

Duplicates removed (%)

8.0

Number of peaks

42509 (qval < 1E-05)

hg19

Number of total reads

28509554

Reads aligned (%)

98.4

Duplicates removed (%)

9.1

Number of peaks

42174 (qval < 1E-05)