Antigen

Antigen Class

TFs and others

Antigen

ID3

Cell type

Cell type Class

Blood

Cell type

K-562

Primary Tissue

Blood

Tissue Diagnosis

Leukemia Chronic Myelogenous

Sample

sample_type

cell line

sex

female

dev stage

adult

age

53 year

donor ID

ENCDO000AAD

lab

Michael Snyder, Stanford

source

ATCC

health state

chronic myelogenous leukemia (CML)

cell line

K562

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/5b07895e-e5e2-49c3-8334-0325f6980b1d/@@download/attachment/ENCODE_Snyder_ChIP-SeqBiorupterTruSeqprotocol_V2.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

63920219

Reads aligned (%)

98.7

Duplicates removed (%)

23.0

Number of peaks

1941 (qval < 1E-05)

hg19

Number of total reads

63920219

Reads aligned (%)

97.9

Duplicates removed (%)

23.6

Number of peaks

797 (qval < 1E-05)