Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Pancreas

Cell type

Pancreas

MeSH Description

A nodular organ in the ABDOMEN that contains a mixture of ENDOCRINE GLANDS and EXOCRINE GLANDS. The small endocrine portion consists of the ISLETS OF LANGERHANS secreting a number of hormones into the blood stream. The large exocrine portion (EXOCRINE PANCREAS) is a compound acinar gland that secretes several digestive enzymes into the pancreatic ductal system that empties into the DUODENUM.

Sample

sample type

tissue

tissue

pancreas

sex

female

health state

DM: yes; HTN: yes; CAD: no

dev_stage

adult

age

59 year

donor ID

ENCDO856ZOJ

lab

Michael Snyder, Stanford

source

Yiing Lin, MD, PhD

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

22521367

Reads aligned (%)

98.8

Duplicates removed (%)

3.7

Number of peaks

11488 (qval < 1E-05)

hg19

Number of total reads

22521367

Reads aligned (%)

97.9

Duplicates removed (%)

5.0

Number of peaks

11464 (qval < 1E-05)