Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Gfi1

Cell type

Cell type Class
Blood
Cell type
Naive T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Gfi1-WT CD4 Thn cell
strain background
C57BL/6
genotype/variation
wild type
tissue
spleen
cell type
Naive CD4 T (CD44lowCD62LhighCD25negative) cells
chip antibody
Gfi
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
30566362
Reads aligned (%)
84.0
Duplicates removed (%)
34.2
Number of peaks
2022 (qval < 1E-05)

mm9

Number of total reads
30566362
Reads aligned (%)
83.8
Duplicates removed (%)
34.3
Number of peaks
1952 (qval < 1E-05)

Base call quality data from DBCLS SRA