SRX109485
GSM838676: hGBM1 + Dox + Arvanil + BMP7 Input (ATF3); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
GBM1-HAM
Primary Tissue
Brain
Tissue Diagnosis
Glioblastoma

Attributes by original data submitter

Sample

source_name
hGBM1 + Dox + Arvanil + BMP7 INPUT (ATF3)
cell type
Glioblastoma Multiforme stem like
genotype
Multiple genetic aberrations
chip antibody
none
treatment
Dox + Arvanil + BMP7

Sequenced DNA Library

library_name
GSM838676: hGBM1 + Dox + Arvanil + BMP7 Input (ATF3)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16233216
Reads aligned (%)
93.3
Duplicates removed (%)
4.4
Number of peaks
703 (qval < 1E-05)

hg19

Number of total reads
16233216
Reads aligned (%)
92.4
Duplicates removed (%)
5.7
Number of peaks
801 (qval < 1E-05)

Base call quality data from DBCLS SRA