SRX109478
GSM838669: hNPCs Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Fetal neural progenitor cells
NA
NA

Attributes by original data submitter

Sample

source_name
hNPCs INPUT
cell type
Foetal Neural Progenitor cells
genotype
Normal; diploid
chip antibody
none

Sequenced DNA Library

library_name
GSM838669: hNPCs Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
100795981
Reads aligned (%)
90.8
Duplicates removed (%)
15.6
Number of peaks
2755 (qval < 1E-05)

hg19

Number of total reads
100795981
Reads aligned (%)
89.8
Duplicates removed (%)
16.7
Number of peaks
1478 (qval < 1E-05)

Base call quality data from DBCLS SRA