SRX109475
GSM838666: INK4A/ARF -/- mNPC 1 Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Neural progenitor cells
NA
NA

Attributes by original data submitter

Sample

source_name
INK4A/ARF -/- mNPC 1 Input
cell type
Adult Neural Progenitor cells
genetic background
INK4a/Arf FVB
genotype
INK4A/ARF -/-
chip antibody
none

Sequenced DNA Library

library_name
GSM838666: INK4A/ARF -/- mNPC 1 Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
10630435
Reads aligned (%)
97.6
Duplicates removed (%)
9.1
Number of peaks
584 (qval < 1E-05)

mm9

Number of total reads
10630435
Reads aligned (%)
97.4
Duplicates removed (%)
9.4
Number of peaks
580 (qval < 1E-05)

Base call quality data from DBCLS SRA