SRX109446
GSM838933: SK-MEL-28 H3K4me3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Epidermis
Cell type
SK-MEL-28
Primary Tissue
Skin
Tissue Diagnosis
Melanoma

Attributes by original data submitter

Sample

source_name
melanoma cell line SK-MEL-28
gender
male
age
51 years adult
tissue
malignant melanoma, noncutaneous metastasis
cell line
melanoma cell line SK-MEL-28
chip antibody
H3K4me3

Sequenced DNA Library

library_name
GSM838933: SK-MEL-28_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12369630
Reads aligned (%)
97.9
Duplicates removed (%)
8.7
Number of peaks
1621 (qval < 1E-05)

hg19

Number of total reads
12369630
Reads aligned (%)
96.7
Duplicates removed (%)
10.1
Number of peaks
1699 (qval < 1E-05)

Base call quality data from DBCLS SRA