SRX1092987
GSM1820481: WT Bead C PR2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
WT DIS3 cells Mock control replicate 2
cell type
HEK293
genotype
WT DIS3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP experiments for RNA polymerase II were performed with MNase treatment and anti-RNA Polymerase II antibody (clone 8WG16, BioLegend). KAPA Hyper Prep Kit (Kapa Biosystems)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
118537749
Reads aligned (%)
79.0
Duplicates removed (%)
27.6
Number of peaks
1262 (qval < 1E-05)

hg19

Number of total reads
118537749
Reads aligned (%)
78.5
Duplicates removed (%)
29.0
Number of peaks
1090 (qval < 1E-05)

Base call quality data from DBCLS SRA