Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
WT DIS3 cells Mock control replicate 1
cell type
HEK293
genotype
WT DIS3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP experiments for RNA polymerase II were performed with MNase treatment and anti-RNA Polymerase II antibody (clone 8WG16, BioLegend). KAPA Hyper Prep Kit (Kapa Biosystems)

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
101105696
Reads aligned (%)
84.0
Duplicates removed (%)
26.8
Number of peaks
1066 (qval < 1E-05)

hg19

Number of total reads
101105696
Reads aligned (%)
83.5
Duplicates removed (%)
28.1
Number of peaks
898 (qval < 1E-05)

Base call quality data from DBCLS SRA