SRX1085074
GSM1812044: SIL-ALL-input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
ALL-SIL
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
SIL-ALL
cell line
leukemia cell line SIL-ALL
chip antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Library preapred according to Illumina's instructions

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27085838
Reads aligned (%)
94.3
Duplicates removed (%)
5.1
Number of peaks
4372 (qval < 1E-05)

hg19

Number of total reads
27085838
Reads aligned (%)
93.5
Duplicates removed (%)
7.1
Number of peaks
4391 (qval < 1E-05)

Base call quality data from DBCLS SRA