SRX1074797
cChIP-seq H3K4me1 rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

isolate
cell line
age
NA
biomaterial_provider
UW-Hawkins Lab
sex
female
tissue
blood
cell_line
K562 cell line

Sequenced DNA Library

library_name
cChIP-seq_H3K4me1_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21902862
Reads aligned (%)
95.2
Duplicates removed (%)
3.1
Number of peaks
5009 (qval < 1E-05)

hg19

Number of total reads
21902862
Reads aligned (%)
94.9
Duplicates removed (%)
3.6
Number of peaks
5041 (qval < 1E-05)

Base call quality data from DBCLS SRA