SRX107410
GSM838388: h3k36me3 si23 ChIP-Seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Hela cells knockdown Med23
chip antibody
H3K36me3
treatment
knockdown Med23
cell line
HeLa
chip antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM838388: h3k36me3 si23 ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
37378122
Reads aligned (%)
96.8
Duplicates removed (%)
55.6
Number of peaks
415 (qval < 1E-05)

hg19

Number of total reads
37378122
Reads aligned (%)
96.3
Duplicates removed (%)
56.7
Number of peaks
385 (qval < 1E-05)

Base call quality data from DBCLS SRA