SRX107339
GSM832711: Thymus wt c3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ikzf1

Cell type

Cell type Class
Blood
Cell type
Thymus
NA
NA

Attributes by original data submitter

Sample

source_name
Whole Thymus
genotype/variation
wt
strain
C57BL/6
tissue
Thymus
age
4 week
chip antibody
Ikaros-N terminal Ab (IkN)

Sequenced DNA Library

library_name
GSM832711: Thymus wt_c3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
34415759
Reads aligned (%)
96.6
Duplicates removed (%)
21.2
Number of peaks
638 (qval < 1E-05)

mm9

Number of total reads
34415759
Reads aligned (%)
96.2
Duplicates removed (%)
21.1
Number of peaks
714 (qval < 1E-05)

Base call quality data from DBCLS SRA