SRX107290
GSM837989: Input WCE ChIP-seq CCRF-CEM 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CCRF-CEM
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
T-ALL cell line
chip antibody
None
antibody catalog number
None WCE
cell line
CCRF-CEM

Sequenced DNA Library

library_name
GSM837989: Input WCE ChIP-seq CCRF-CEM 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11299428
Reads aligned (%)
39.1
Duplicates removed (%)
69.5
Number of peaks
33 (qval < 1E-05)

hg19

Number of total reads
11299428
Reads aligned (%)
38.4
Duplicates removed (%)
71.1
Number of peaks
35 (qval < 1E-05)

Base call quality data from DBCLS SRA