Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Digestive tract
Cell type
Intestine
NA
NA

Attributes by original data submitter

Sample

source_name
WGA
treatment
Bisulfite-converted Padlock
tissue
Intestine

Sequenced DNA Library

library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
library_construction_protocol
DNA from tissues were extracted by standard phenol chloroform extraction Bisulfite padlock probes technique was used to interrogate the lactase gene region and minichromosome maintenance deficient 6 gene of humans and mice

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
3909041
Reads aligned (%)
46.3
Coverage rate (×)
0.1
Number of hyper MRs
6 (qval < 1E-05)

hg19

Number of total reads
3909041
Reads aligned (%)
46.7
Coverage rate (×)
0.1
Number of hyper MRs
5 (qval < 1E-05)

Base call quality data from DBCLS SRA