SRX106080
GSM835570: WBS H4K20me1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H4K20me1

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cell line
Tissue
blood
Lineage
mesoderm
Description
parental cell type to lymphoblastoid cell lines

Attributes by original data submitter

Sample

source_name
EBV transformed mononuclear cells from perypherial blood
cell type
Lymphoblastoid cells
cell line id
GM13472
chip antibody
H4K20me1 [Abcam ab9051]

Sequenced DNA Library

library_name
GSM835570: WBS_H4K20me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
49511250
Reads aligned (%)
71.8
Duplicates removed (%)
28.9
Number of peaks
514 (qval < 1E-05)

hg19

Number of total reads
49511250
Reads aligned (%)
71.2
Duplicates removed (%)
30.0
Number of peaks
956 (qval < 1E-05)

Base call quality data from DBCLS SRA