Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
DOT1L

Cell type

Cell type Class
Digestive tract
Cell type
GIST-T1
NA
NA

Attributes by original data submitter

Sample

source_name
KIT-dependent GIST cell line GIST-T1
cell line
GIST-T1
cell type
Gastrointestinal stromal tumor (GIST)
antibody
DOT1L, Cell Signaling Technology Cat# 77087
technique
ChIP-seq
target
Endogenous DOT1L

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Libraries for single-end 75 bp sequencing on an Illumina NextSeq 500 or paired-end 37 bp sequencing on an Illumina NextSeq 550 were prepared with a ThruPLEX DNA-seq Kit (Takara).

Sequencing Platform

instrument_model
NextSeq 550

hg38

Number of total reads
38012259
Reads aligned (%)
97.0
Duplicates removed (%)
60.5
Number of peaks
49285 (qval < 1E-05)

hg19

Number of total reads
38012259
Reads aligned (%)
96.5
Duplicates removed (%)
60.9
Number of peaks
49005 (qval < 1E-05)

Base call quality data from DBCLS SRA