SRX1058358
GSM1711445: Sox2 control; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Sox2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
ES-derived NS5 cells_control
cell type
NS5
cell type
neural stem cell line
chip antibody
Sox-2 Antibody (Y-17); goat polyclonal
chip antibody vendor
Santa Cruz Biotechnology

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was sonicated and immunoprecipitated with respective antibodies Illumina Genome Analyzer library prep

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
29032363
Reads aligned (%)
90.9
Duplicates removed (%)
13.3
Number of peaks
16379 (qval < 1E-05)

mm9

Number of total reads
29032363
Reads aligned (%)
90.8
Duplicates removed (%)
13.4
Number of peaks
16380 (qval < 1E-05)

Base call quality data from DBCLS SRA