SRX1058356
GSM1711443: Brn1 ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
ES-derived NS5 cells_ChIP
cell type
NS5
cell type
neural stem cell line
chip antibody
rabbit polyclonals
chip antibody vendor
Dies Meijer' lab, Edinburgh

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was sonicated and immunoprecipitated with respective antibodies Illumina Genome Analyzer library prep

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
17864245
Reads aligned (%)
93.0
Duplicates removed (%)
8.2
Number of peaks
1359 (qval < 1E-05)

mm9

Number of total reads
17864245
Reads aligned (%)
92.9
Duplicates removed (%)
8.4
Number of peaks
1174 (qval < 1E-05)

Base call quality data from DBCLS SRA