SRX1056336
GSM1708649: 416b H3K27Ac; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
416B
Tissue
Blood
Lineage
cellLine
Description
myeloid progenitor cells, CD34+

Attributes by original data submitter

Sample

source_name
myeloid progenitor cell line
cell line
416B
cell type
myeloid progenitor cell line
chip antibody
H3K27Ac
chip antibody vendor
Abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
As described in Wilson et al., Cell Stem Cell. 2010 Oct 8;7(4):532-44 According to Illumina TruSeq DNA Sample Prep Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
27670511
Reads aligned (%)
90.3
Duplicates removed (%)
34.9
Number of peaks
25504 (qval < 1E-05)

mm9

Number of total reads
27670511
Reads aligned (%)
90.2
Duplicates removed (%)
34.9
Number of peaks
25513 (qval < 1E-05)

Base call quality data from DBCLS SRA