SRX1054676
Chip-Seq in imMDF H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Epidermis
Cell type
Dermal fibroblasts
NA
NA

Attributes by original data submitter

Sample

breed
not applicable
age
not appliciable
sex
not applicable
tissue
Immortalized murine dermal fibroblasts

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
29862974
Reads aligned (%)
98.7
Duplicates removed (%)
6.4
Number of peaks
16648 (qval < 1E-05)

mm9

Number of total reads
29862974
Reads aligned (%)
98.6
Duplicates removed (%)
7.0
Number of peaks
16638 (qval < 1E-05)

Base call quality data from DBCLS SRA