SRX105262
GSM699332: HCT116 high MethylCap

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
HCT116
eluate
high
cell line
HCT116
sample type
human colon carcinoma cell line established from the primary colon carcinoma of an adult man
technique
ChIP-sequencing
binding/selection
Protein domain His6-GST-MBD (Diagenode)
binding protein
His6-GST-MBD
binding protein vendor
Diagenode

Sequenced DNA Library

library_name
GSM699332: HCT116 high MethylCap
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9869360
Reads aligned (%)
80.2
Duplicates removed (%)
6.3
Number of peaks
7242 (qval < 1E-05)

hg19

Number of total reads
9869360
Reads aligned (%)
79.7
Duplicates removed (%)
6.9
Number of peaks
7280 (qval < 1E-05)

Base call quality data from DBCLS SRA