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Install and launch IGV before selecting data to visualize
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Jarid2
wikigenes
PDBj
CellType: 3rd instar
ATCC
MeSH
RIKEN BRC
SRX104961
GSM829665: larvae wt1 jarid2; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Jarid2
Cell type
Cell type Class
Larvae
Cell type
3rd instar
NA
NA
Attributes by original data submitter
Sample
source_name
whole larvae
tissue
3rd instar larvae
antibody
rb-α-Jarid2 (Masamitsu Yamaguchi)
ChIP
dJarid2
genotype/variation
wild type
Sequenced DNA Library
library_name
GSM829665: larvae_wt1_jarid2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
dm3
Number of total reads
41546488
Reads aligned (%)
60.8
Duplicates removed (%)
35.1
Number of peaks
12191 (qval < 1E-05)
dm6
Number of total reads
41546488
Reads aligned (%)
59.8
Duplicates removed (%)
36.0
Number of peaks
12071 (qval < 1E-05)
Base call quality data from
DBCLS SRA