Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Jarid2

Cell type

Cell type Class
Larvae
Cell type
3rd instar
NA
NA

Attributes by original data submitter

Sample

source_name
whole larvae
tissue
3rd instar larvae
antibody
rb-α-Jarid2 (Masamitsu Yamaguchi)
ChIP
dJarid2
genotype/variation
wild type

Sequenced DNA Library

library_name
GSM829665: larvae_wt1_jarid2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

dm3

Number of total reads
41546488
Reads aligned (%)
60.8
Duplicates removed (%)
35.1
Number of peaks
12191 (qval < 1E-05)

dm6

Number of total reads
41546488
Reads aligned (%)
59.8
Duplicates removed (%)
36.0
Number of peaks
12071 (qval < 1E-05)

Base call quality data from DBCLS SRA