ChIP-Atlas: SRX10478404

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: TFs and others
Antigen: PRDM1

Cell type

Cell type Class: Lung
Cell type: A549
Primary Tissue: Lung
Tissue Diagnosis: Carcinoma

Attributes by original data submitter

Sample

sample type: cell line
cell line: A549
sex: male
dev stage: adult
age: 58 year
donor ID: ENCDO000AAZ
lab: Michael Snyder, Stanford
source: Michael Snyder

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: general protocol: https://www.encodeproject.org/documents/716003cd-3ce7-41ce-b1e3-6f203b6632a0/@@download/attachment/ENCODE4%20_Snyder_ChIP-seq_BiorupterTruSeqProtocol_v1.pdf

Sequencing Platform

instrument_model: Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 42446256
Reads aligned (%): 98.4
Duplicates removed (%): 14.5
Number of peaks: 6352 (qval < 1E-05)

hg19

Number of total reads: 42446256
Reads aligned (%): 97.6
Duplicates removed (%): 14.8
Number of peaks: 5172 (qval < 1E-05)

Base call quality data from DBCLS SRA