Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Cardiovascular

Cell type

Heart Ventricles

MeSH Description

The lower right and left chambers of the heart. The right ventricle pumps venous BLOOD into the LUNGS and the left ventricle pumps oxygenated blood into the systemic arterial circulation.

Sample

sample type

tissue

tissue

heart left ventricle

sex

male

health state

DM: no; HTN: yes; CAD: no

dev_stage

adult

age

40 year

donor ID

ENCDO392CRK

lab

Michael Snyder, Stanford

source

Yiing Lin, MD, PhD

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/746c5cbc-c9ee-4599-b3c3-476da29a8207/@@download/attachment/Frozen%20Tissue%20for%20ChIP%20Using%20the%20Covaris%20Hammer%20v%202.1.pdf

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

45650662

Reads aligned (%)

98.4

Duplicates removed (%)

6.7

Number of peaks

25685 (qval < 1E-05)

hg19

Number of total reads

45650662

Reads aligned (%)

97.4

Duplicates removed (%)

8.0

Number of peaks

25366 (qval < 1E-05)