SRX10476782
GSM5215014: TF ChIP-seq from gastrocnemius medialis (ENCLB341VGV); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Muscle
Cell type
Gastrocnemius medialis
NA
NA

Attributes by original data submitter

Sample

sample_type
tissue
tissue
gastrocnemius medialis
sex
female
dev_stage
adult
age
51 year
donor ID
ENCDO271OUW
lab
Bradley Bernstein, Broad
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41870336
Reads aligned (%)
98.0
Duplicates removed (%)
9.5
Number of peaks
31579 (qval < 1E-05)

hg19

Number of total reads
41870336
Reads aligned (%)
97.1
Duplicates removed (%)
10.5
Number of peaks
31135 (qval < 1E-05)

Base call quality data from DBCLS SRA