Antigen

Antigen Class

TFs and others

Antigen

RAD21

Cell type

Cell type Class

Liver

Cell type

Hep G2

Primary Tissue

Liver

Tissue Diagnosis

Carcinoma Hepatocellular

Sample

sample type

cell line

cell line

HepG2

sex

male

health state

hepatocellular carcinoma

dev stage

child

age

15 year

donor ID

ENCDO000AAC

lab

Michael Snyder, Stanford

source

Michael Snyder

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/716003cd-3ce7-41ce-b1e3-6f203b6632a0/@@download/attachment/ENCODE4%20_Snyder_ChIP-seq_BiorupterTruSeqProtocol_v1.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

71476869

Reads aligned (%)

46.1

Duplicates removed (%)

18.4

Number of peaks

19064 (qval < 1E-05)

hg19

Number of total reads

71476869

Reads aligned (%)

45.8

Duplicates removed (%)

18.6

Number of peaks

18442 (qval < 1E-05)