Antigen

Antigen Class

TFs and others

Antigen

CHD4

Cell type

Cell type Class

Liver

Cell type

Hep G2

Primary Tissue

Liver

Tissue Diagnosis

Carcinoma Hepatocellular

Sample

sex

male

cell line

HepG2

lab

Bradley Bernstein, Broad

passage number

4

sample_type

immortalized cell line

health state

hepatocellular carcinoma

age

15 year

donor ID

ENCDO000AAC

dev_stage

child

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/20ebf60b-4009-4a57-a540-8fd93407eccc/@@download/attachment/Epigenomics_CR_ChIP_Protocol_v1.0.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

47120498

Reads aligned (%)

98.3

Duplicates removed (%)

17.3

Number of peaks

16452 (qval < 1E-05)

hg19

Number of total reads

47120498

Reads aligned (%)

97.6

Duplicates removed (%)

17.5

Number of peaks

16274 (qval < 1E-05)