SRX104392
GSM824846: Pol2 Nocodazole mES MM8

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
chip antibody
RNA Pol II (Rpb1 N-terminus)
antibody catalog number
Santa Cruz SC-899
antibody manufacturer
Santa Cruz
cell line
V6.5 embryonic stem cells
treatment
200 ng/ml nocodazole
time
12 hr

Sequenced DNA Library

library_name
GSM824846: Pol2 Nocodazole mES MM8
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
148969614
Reads aligned (%)
72.1
Duplicates removed (%)
37.2
Number of peaks
27396 (qval < 1E-05)

mm9

Number of total reads
148969614
Reads aligned (%)
71.9
Duplicates removed (%)
37.2
Number of peaks
27391 (qval < 1E-05)

Base call quality data from DBCLS SRA