SRX104382
GSM824836: CapH2 shGFP mES MM8

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ncaph2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
chip antibody
CAPH2
antibody catalog number
Bethyl A302-275A
antibody manufacturer
Bethyl
cell line
V6.5 embryonic stem cells
knockdown
control

Sequenced DNA Library

library_name
GSM824836: CapH2 shGFP mES MM8
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
31381872
Reads aligned (%)
86.0
Duplicates removed (%)
19.9
Number of peaks
5237 (qval < 1E-05)

mm9

Number of total reads
31381872
Reads aligned (%)
85.8
Duplicates removed (%)
20.0
Number of peaks
5121 (qval < 1E-05)

Base call quality data from DBCLS SRA