Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BEAF-32

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
S2 cells
cell line
S2 cells
chip antibody
BEAF-33

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody Chromatin immobilization and barcoding performed as previously described (Gutin, J. et al. Fine-Resolution Mapping of TF Binding and Chromatin Interactions. Cell Rep. 22, 2797–2807 (2018).)

Sequencing Platform

instrument_model
NextSeq 500

dm6

Number of total reads
5796722
Reads aligned (%)
93.8
Duplicates removed (%)
30.9
Number of peaks
4128 (qval < 1E-05)

dm3

Number of total reads
5796722
Reads aligned (%)
94.8
Duplicates removed (%)
28.4
Number of peaks
4575 (qval < 1E-05)

Base call quality data from DBCLS SRA