Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase III

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Mouse liver cells
strain
C57BL/6
tissue
liver
chip antibody
RPC1
chip antibody manufacturer
Made in our lab
chip antibody catalog number
CS377, raised against the C-terminus of RPC1, peptide PKRPLIFDTNEFHIPLVT, see (Sepehri and Hernandez 1997)),
chiip antibody lot/batch
none

Sequenced DNA Library

library_name
GSM826718: RPC1_Rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
26592886
Reads aligned (%)
98.9
Duplicates removed (%)
11.8
Number of peaks
852 (qval < 1E-05)

mm9

Number of total reads
26592886
Reads aligned (%)
98.8
Duplicates removed (%)
11.9
Number of peaks
855 (qval < 1E-05)

Base call quality data from DBCLS SRA