Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Liver
Cell type
Hepatocytes
MeSH Description
The main structural component of the LIVER. They are specialized EPITHELIAL CELLS that are organized into interconnected plates called lobules.

Attributes by original data submitter

Sample

breed
C57BL/6
age
8-12 weeks
sex
male
tissue
liver
cell_type
hepatocytes

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
26111481
Reads aligned (%)
94.3
Duplicates removed (%)
12.8
Number of peaks
3498 (qval < 1E-05)

mm9

Number of total reads
26111481
Reads aligned (%)
94.2
Duplicates removed (%)
12.9
Number of peaks
3477 (qval < 1E-05)

Base call quality data from DBCLS SRA