Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Cardiovascular
Cell type
Heart
MeSH Description
The hollow, muscular organ that maintains the circulation of the blood.

Attributes by original data submitter

Sample

source_name
heart tissue
age
13w
strain
Dahl salt sensitive
sample group
treatment [high-salt diet with 0.25 mg/kg of chaetocin treatment, HS (+)]
tissue
heart
chip-antibody
H3K4me3
chip-antibody vendor
abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were extracted from one gram of crushed left ventricular tissue per group, cross-linked with 0.5% formaldehyde, sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions (TruSeq ChIP Sample Preparation Guide Rev. A) accompanying TruSeq ChIP Sample Prep Kit. Briefly, DNA were blunted, phosphorylated, protruded with 3- 'A' base, and ligated with adapters. After adapter ligation DNA was isolated from an agarose gel and amplified with PCR. The DNA was captured for cluster generation. Libraries were sequenced on the HiSeq 2000 following the manufacturer's protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

rn6

Number of total reads
107811340
Reads aligned (%)
97.0
Duplicates removed (%)
95.3
Number of peaks
11789 (qval < 1E-05)

Base call quality data from DBCLS SRA