SRX1035080
lobChIP NRF1-4

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

isolate
HepG2
age
NA
biomaterial_provider
ATCC
sex
male
tissue
lier
cell_line
HepG2

Sequenced DNA Library

library_name
lobChIP_NRF1-4.bam
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12829041
Reads aligned (%)
99.8
Duplicates removed (%)
56.0
Number of peaks
1487 (qval < 1E-05)

hg19

Number of total reads
12829041
Reads aligned (%)
93.1
Duplicates removed (%)
57.0
Number of peaks
1826 (qval < 1E-05)

Base call quality data from DBCLS SRA