Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP shFOXA1 Normal FOXA1 ChIP s8
cell line
LNCaP
cell type
prostate tumor
treatment
Normal
antibody
FoxA1 (abcam, catalog# ab23738, lot# GR44102-1)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model
Illumina HiScanSQ

hg19

Number of total reads
30215487
Reads aligned (%)
30.6
Duplicates removed (%)
60.9
Number of peaks
30921 (qval < 1E-05)

hg38

Number of total reads
30215487
Reads aligned (%)
31.8
Duplicates removed (%)
59.7
Number of peaks
30910 (qval < 1E-05)

Base call quality data from DBCLS SRA