Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
DU 145
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
DU145 pLenti Ctrl input m101
cell line
DU145
cell type
prostate tumor

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model
Illumina HiScanSQ

hg38

Number of total reads
34960262
Reads aligned (%)
90.6
Duplicates removed (%)
7.7
Number of peaks
867 (qval < 1E-05)

hg19

Number of total reads
34960262
Reads aligned (%)
89.9
Duplicates removed (%)
8.9
Number of peaks
967 (qval < 1E-05)

Base call quality data from DBCLS SRA