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For hg38
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BigWig
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: FOXA1
wikigenes
PDBj
CellType: LNCAP
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1033279
GSM1691151: LNCaP shGATA2 R1881 (10nM,16h) FOXA1 ChIP m75; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
FOXA1
Cell type
Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
LNCaP shGATA2 R1881 (10nM,16h) FOXA1 ChIP m75
cell line
LNCaP
cell type
prostate tumor
treatment
R1881 (10nM,16h)
antibody
FoxA1 (abcam, catalog# ab23738, lot# GR44102-1)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions.
Sequencing Platform
instrument_model
Illumina HiScanSQ
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
20577489
Reads aligned (%)
89.3
Duplicates removed (%)
11.3
Number of peaks
64724 (qval < 1E-05)
hg19
Number of total reads
20577489
Reads aligned (%)
88.9
Duplicates removed (%)
12.0
Number of peaks
64661 (qval < 1E-05)
Base call quality data from
DBCLS SRA