SRX103263
GSM822391: MCF-7 vehicle H3K4me2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
breast cancer cells
cell line
MCF-7
cell type
breast cancer cells
passages
20-26
treatment
ethanol
chip antibody
H3K4me2
sample type
Chromatin IP against H3K4me2
chip antibody manufacturer
Millipore

Sequenced DNA Library

library_name
GSM822391: MCF-7 vehicle H3K4me2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25668688
Reads aligned (%)
31.4
Duplicates removed (%)
24.2
Number of peaks
38441 (qval < 1E-05)

hg19

Number of total reads
25668688
Reads aligned (%)
31.2
Duplicates removed (%)
24.6
Number of peaks
38370 (qval < 1E-05)

Base call quality data from DBCLS SRA