Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
dl

Cell type

Cell type Class
Embryo
Cell type
2-4h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
tl10b embryos
developmental stage
2-4 hr after egg deposition
genotype/variation
tl10b
chip antibody
Custom GenScript Dl (aa 39-346) 126740-44
barcode kit
none
library kit
NEB-next-DNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq was performed according to He et al. (2011) with whole cell extract (WCE) derived from 100 mg embryos per ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

dm3

Number of total reads
11280670
Reads aligned (%)
60.2
Duplicates removed (%)
36.6
Number of peaks
3070 (qval < 1E-05)

dm6

Number of total reads
11280670
Reads aligned (%)
55.5
Duplicates removed (%)
41.2
Number of peaks
3719 (qval < 1E-05)

Base call quality data from DBCLS SRA