Curated Sample Data


Genome
dm3
Antigen Class
Histone
Antigen
H3K27me3
Cell type Class
Embryo
Cell type
2-4h embryos

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
gd7 embryos
developmental stage
2-4 hr after egg deposition
genotype/variation
gd7
chip antibody
H3K27me3 (Active Motif Carlsbad, CA, catalog #39155)
barcode kit
NEB-next-ChIP
library kit
NEB-next-ChIP

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq was performed according to He et al. (2011) with whole cell extract (WCE) derived from 100 mg embryos per ChIP

Platform Information


instrument_model
Illumina HiSeq 2500

External Database Query

Logs in read processing pipeline


Number of total reads
24535827
Reads aligned (%)
96.9
Duplicates removed (%)
20.8
Number of peaks
5080 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA