SRX103217
GSM822519: H3K27me3 ChIPSeq mt; Mus musculus; ChIP

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by original data submitter

Sample

source_name
C2C12 myotube
cell type
C2C12 myotube
passages
15-18
strain
C3H
chip antibody
H3K27me3

Sequenced DNA Library

library_name
GSM822519: H3K27me3_ChIPSeq_mt
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
10492540
Reads aligned (%)
83.1
Duplicates removed (%)
8.6
Number of peaks
139 (qval < 1E-05)

mm9

Number of total reads
10492540
Reads aligned (%)
82.9
Duplicates removed (%)
8.8
Number of peaks
209 (qval < 1E-05)

Base call quality data from DBCLS SRA