Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Adult
ATCC
MeSH
RIKEN BRC
SRX1030170
GSM1688841: ChIP-Seq (input); Caenorhabditis elegans; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Adult
Cell type
Adult
NA
NA
Attributes by original data submitter
Sample
source_name
whole worm WT gDNA
antibody
none, input
developmental stage
WT (N2) mixed stage worms
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Worms were washed several times with M9 buffer and snap frozen in liquid nitrogen. Pellets were sent to Umass Medical School Deep Sequencing Core for gDNA extraction and ChIP-Seq Library was constructed by Umass Medical School Deep sequencing core
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
24819951
Reads aligned (%)
100.0
Duplicates removed (%)
4.1
Number of peaks
0 (qval < 1E-05)
ce10
Number of total reads
24819951
Reads aligned (%)
100.0
Duplicates removed (%)
4.1
Number of peaks
0 (qval < 1E-05)
Base call quality data from
DBCLS SRA