SRX102981
GSM822280: UT-A ChipSeq HUVEC Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HUVEC
biomaterial_provider
Lonza
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
treatment
None
treatment description
No special treatment or protocol applies
controlid
wgEncodeEH000550
labversion
fseq v 1.84
cell description
umbilical vein endothelial cells
cell karyotype
normal
cell lineage
mesoderm
cell sex
U
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid
HUVEC/Input
labversion
align_on_cluster_bwa.pl v 1

Sequenced DNA Library

library_name
GSM822280: UT-A_ChipSeq_HUVEC_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15252372
Reads aligned (%)
98.3
Duplicates removed (%)
19.3
Number of peaks
439 (qval < 1E-05)

hg19

Number of total reads
15252372
Reads aligned (%)
97.4
Duplicates removed (%)
20.5
Number of peaks
631 (qval < 1E-05)

Base call quality data from DBCLS SRA