Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Blood

Cell type

GM19240

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

Sample

source_name

GM19240

biomaterial_provider

Coriell

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

treatment

None

treatment description

No special treatment or protocol applies

antibody antibodydescription

Rabbit polyclonal. Antibody Target: CTCF

antibody targetdescription

CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

antibody vendorname

Millipore

antibody vendorid

07-729

controlid

generic_female

labversion

baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female

replicate

1,2

antibody targetdescription

CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

antibody vendorname

Millipore

antibody vendorid

07-729

controlid

generic_female

labversion

align_on_cluster_bwa.pl v 1

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM822276: UT-A_ChipSeq_GM19240_CTCF

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

33399839

Reads aligned (%)

97.1

Duplicates removed (%)

33.1

Number of peaks

50158 (qval < 1E-05)

hg19

Number of total reads

33399839

Reads aligned (%)

95.4

Duplicates removed (%)

32.8

Number of peaks

51805 (qval < 1E-05)