SRX102950
GSM821510: Input-seq in RA-treated P19.6 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
P19
Tissue
Embryo
Disease
Teratocarcinoma; Embryonal Carcinoma

Attributes by original data submitter

Sample

source_name
RA-treated P19.6 cells, input
cell line
P19.6
cell type
embryonal carcinoma cells
background strain
C3H/HeHa
treatment
all-trans retinoic acid (RA)
treatment dosage
1µM
treatment duration
48 hours
ip antibody
none

Sequenced DNA Library

library_name
GSM821510: Input-seq in RA-treated P19.6 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
25827743
Reads aligned (%)
93.7
Duplicates removed (%)
55.0
Number of peaks
556 (qval < 1E-05)

mm9

Number of total reads
25827743
Reads aligned (%)
93.3
Duplicates removed (%)
55.1
Number of peaks
665 (qval < 1E-05)

Base call quality data from DBCLS SRA