Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
shn

Cell type

Cell type Class
Cell line
Cell type
Kc167
Source
e/se
Developmental Stage
dorsal closure stage

Attributes by original data submitter

Sample

source_name
Drosophila Kc167 cells
cell-type
Late-stage embryonic plasmatocyte (Kc167)
antibody
Schnurri rabbit polyclonal (gift from Dr. Mark Biggin)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DPP and control lysates were extracted after 6 hr incubations Libraries were prepared for paired-end sequencing with Illumina adaptors (cat# PE-102-1001)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm3

Number of total reads
15300147
Reads aligned (%)
59.8
Duplicates removed (%)
67.8
Number of peaks
3318 (qval < 1E-05)

dm6

Number of total reads
15300147
Reads aligned (%)
59.4
Duplicates removed (%)
71.6
Number of peaks
2097 (qval < 1E-05)

Base call quality data from DBCLS SRA