SRX101808
GSM820727: EedKO-CBX7

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Cbx7

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells WT
cell type
embryonic stem cells
strain
C57BL/6
genotype/variation
Eed -/-
chip antibody
CBX7
chip antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM820727: EedKO-CBX7
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
46626511
Reads aligned (%)
98.1
Duplicates removed (%)
35.8
Number of peaks
457 (qval < 1E-05)

mm9

Number of total reads
46626511
Reads aligned (%)
97.9
Duplicates removed (%)
36.5
Number of peaks
453 (qval < 1E-05)

Base call quality data from DBCLS SRA